STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OLFM3Olfactomedin 3. (478 aa)    
Predicted Functional Partners:
STUB1
STIP1 homology and U-box containing protein 1.
    
 
 0.801
PCSK2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
  
 0.630
GRIA1
Glutamate ionotropic receptor AMPA type subunit 1.
   
 0.616
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.591
NFASC
Neurofascin.
   
  
 0.572
UNC5B
Unc-5 netrin receptor B.
      
 0.567
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
      
 0.527
SLITRK5
SLIT and NTRK like family member 5.
   
 
 0.509
GRIA3
Glutamate ionotropic receptor AMPA type subunit 3.
   
 0.501
SLITRK1
SLIT and NTRK like family member 1.
   
 
 0.500
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.