Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor 1. (1093 aa)    
Predicted Functional Partners:
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.858
SYS1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
     
 0.812
ARFRP1
ADP ribosylation factor related protein 1.
     
 0.811
VPS53
VPS53 subunit of GARP complex.
     
 0.808
VPS51
VPS51 subunit of GARP complex.
     
 0.801
VPS52
VPS52 subunit of GARP complex.
     
 0.781
ATP5ME
ATP synthase membrane subunit e.
    
   0.700
CENPW
Centromere protein W.
      
 0.693
RAB6A
RAB6A, member RAS oncogene family.
    
 0.671
CYBB
Cytochrome b-245 beta chain.
      
 0.657
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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