Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMNTD1Lamin tail domain containing 1. (403 aa)    
Predicted Functional Partners:
LEMD3
LEM domain containing 3.
    
 0.717
BANF1
Barrier to autointegration factor 1.
    
 0.715
RASSF8
Ras association domain family member 8.
      
 0.670
GPR87
G protein-coupled receptor 87; Belongs to the G-protein coupled receptor 1 family.
      
 0.647
EMD
Emerin.
    
 0.620
WDR48
WD repeat domain 48.
      
 0.560
BANF2
Barrier to autointegration factor 2.
    
 0.546
NUP153
Nucleoporin 153.
    
 
 0.537
TMPO
Thymopoietin.
   
 0.534
MYO3A
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.504
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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