STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD1Rhomboid domain containing 1. (288 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.836
KLHL31
Kelch like family member 31.
      
 0.738
TMEM70
Uncharacterized protein.
      
 0.737
TMEM214
Transmembrane protein 214.
      
 0.724
TMEM38A
Transmembrane protein 38A.
      
 0.695
POPDC2
Popeye domain containing 2.
    
 
 0.689
SAE1
SUMO1 activating enzyme subunit 1.
      
 0.631
FAM118A
Family with sequence similarity 118 member A.
    
 0.550
FILIP1L
Filamin A interacting protein 1 like.
   
 
 0.516
G3TGV5_LOXAF
Uncharacterized protein.
    
 
 0.503
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.