Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL4A4Collagen type IV alpha 4 chain. (1446 aa)    
Predicted Functional Partners:
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.922
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.905
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
    
 0.901
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.895
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
    
 0.893
ITGA3
Integrin subunit alpha 3; Belongs to the integrin alpha chain family.
   
 0.892
ITGA10
Integrin subunit alpha 10; Belongs to the integrin alpha chain family.
    
 0.890
ITGB4
Integrin beta.
    
 0.888
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.886
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.884
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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