Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EOMESEomesodermin. (700 aa)    
Predicted Functional Partners:
MIXL1
Mix paired-like homeobox.
   
 0.900
FOXA2
Forkhead box A2.
   
 0.865
SOX17
SRY-box transcription factor 17.
    
 0.865
GATA6
Uncharacterized protein.
    
 0.864
NANOG
Homeobox domain-containing protein.
   
 0.781
GATA4
GATA binding protein 4.
    
 0.684
CD8A
CD8a molecule.
   
  
 0.683
GATA3
GATA binding protein 3.
    
 0.681
CDX2
Caudal type homeobox 2.
    
 
 0.651
OTX2
Orthodenticle homeobox 2.
    
 
 0.632
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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