Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUNH4orf22Uncharacterized protein. (123 aa)    
Predicted Functional Partners:
C4orf47
Chromosome 4 open reading frame 47.
   
 
 0.760
AK9
Uncharacterized protein.
    
   0.676
G3TCK5_LOXAF
Uncharacterized protein.
    
   0.676
G3T6D0_LOXAF
Uncharacterized protein.
    
 0.638
DLG1
Discs large MAGUK scaffold protein 1; Belongs to the MAGUK family.
    
 0.638
G3UJQ4_LOXAF
Uncharacterized protein.
    
 0.638
TMEM33
Transmembrane protein 33.
      
 0.631
CCNH
Cyclin H; Belongs to the cyclin family.
      
 0.624
PACRG
Parkin coregulated.
  
   0.614
CCDC60
Coiled-coil domain containing 60.
   
    0.602
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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