STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F13BCoagulation factor XIII B chain. (659 aa)    
Predicted Functional Partners:
F13A1
Coagulation factor XIII A chain.
    
 0.995
F2
Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.
   
 0.953
SERPIND1
Serpin family D member 1; Belongs to the serpin family.
   
 
 0.930
TGM1
Transglutaminase 1.
    
 0.920
FGG
Fibrinogen gamma chain.
   
 0.889
FGA
Fibrinogen alpha chain.
   
 0.869
HGD
Homogentisate 1,2-dioxygenase.
   
  
 0.833
G3TJV3_LOXAF
Uncharacterized protein.
   
 0.796
FGB
Fibrinogen beta chain.
   
 0.791
SERPINC1
Serpin family C member 1; Belongs to the serpin family.
   
 
 0.787
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.