STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC3H1Ring finger and CCCH-type domains 1. (1097 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.657
TRAPPC10
Uncharacterized protein.
    
 
 0.604
MYSM1
Myb like, SWIRM and MPN domains 1.
   
   0.563
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 
 0.559
ZC3H12A
Zinc finger CCCH-type containing 12A.
   
  
 0.529
RC3H2
Ring finger and CCCH-type domains 2.
  
 
  
0.525
ICOS
Inducible T cell costimulator.
      
 0.525
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 
 0.524
CNOT9
CCR4-NOT transcription complex subunit 9.
    
 
 0.509
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 
 0.489
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.