Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC3H1Ring finger and CCCH-type domains 1. (1097 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.938
RC3H2
Ring finger and CCCH-type domains 2.
   
   0.931
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.852
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 
 0.836
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 
 0.830
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 
 0.825
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.822
NUFIP2
Nuclear FMR1 interacting protein 2.
   
 
 0.817
CNOT10
CCR4-NOT transcription complex subunit 10.
    
 
 0.816
TNKS1BP1
Tankyrase 1 binding protein 1.
    
   0.793
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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