STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM5PDZ and LIM domain 5. (591 aa)    
Predicted Functional Partners:
PDLIM7
PDZ and LIM domain 7.
    
 
0.947
LDB3
LIM domain binding 3.
     
 
0.937
DBN1
Drebrin 1.
   
 
 0.753
GBP6
Guanylate binding protein family member 6.
      
 0.738
DOK3
Docking protein 3.
     
 0.730
PDLIM1
PDZ and LIM domain 1.
   
 
0.697
RWDD2B
RWD domain-containing protein.
   
   0.686
PDLIM3
PDZ and LIM domain 3.
   
 
0.680
SORBS2
Sorbin and SH3 domain containing 2.
   
 0.660
DYRK1A
Dual specificity tyrosine phosphorylation regulated kinase 1A.
   
 
 0.656
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.