STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (648 aa)    
Predicted Functional Partners:
DROSHA
Drosha ribonuclease III.
   
 0.969
DHX9
DExH-box helicase 9.
   
 0.905
SF3B1
Splicing factor 3b subunit 1.
   
 0.904
NANOG
Homeobox domain-containing protein.
    
 0.902
DDX17
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 
0.864
ESR1
NR LBD domain-containing protein.
    
 0.842
MTREX
Mtr4 exosome RNA helicase.
   
 0.802
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.800
ALYREF
Aly/REF export factor.
   
 0.785
RBM23
RNA binding motif protein 23.
   
 0.773
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.