Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (648 aa)    
Predicted Functional Partners:
DDX17
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.996
SPC24
Uncharacterized protein.
   
    0.993
DHX9
DExH-box helicase 9.
   
 0.992
DROSHA
Drosha ribonuclease III.
   
 0.991
RBM23
RNA binding motif protein 23.
   
 0.960
RBM39
RNA binding motif protein 39.
   
 0.960
SF3B1
Splicing factor 3b subunit 1.
   
 0.947
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.939
ALYREF
Aly/REF export factor.
   
 0.935
ESR1
NR LBD domain-containing protein.
    
 0.933
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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