STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPTSSBSerine palmitoyltransferase small subunit B. (76 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.924
SPTSSA
Serine palmitoyltransferase small subunit A.
  
  
0.755
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.748
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.748
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.582
ISM1
Isthmin 1.
    
 0.561
ST8SIA6
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6; Belongs to the glycosyltransferase 29 family.
      
 0.543
G3SWN4_LOXAF
AMOP domain-containing protein.
    
 0.539
ORMDL3
ORM1-like protein; Negative regulator of sphingolipid synthesis.
     
 0.507
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
      
 0.456
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.