Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPTSSBSerine palmitoyltransferase small subunit B. (76 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.982
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.963
SPTSSA
Serine palmitoyltransferase small subunit A.
  
  
0.956
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.949
ISM1
Isthmin 1.
    
 0.799
G3SWN4_LOXAF
AMOP domain-containing protein.
    
 0.569
GOLGA7B
Golgin A7 family member B.
     
  0.540
GOLGA7
Golgin A7.
     
  0.540
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.517
KCNK4
Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.510
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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