STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRFN1Leucine rich repeat and fibronectin type III domain containing 1. (765 aa)    
Predicted Functional Partners:
PTPRD
Protein tyrosine phosphatase receptor type D.
   
 0.742
ADGRL3
Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.
    
   0.658
ADGRL2
Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.
    
   0.658
ADGRL1
Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.
    
   0.658
DLG4
Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.
   
 0.609
PTPRF
Protein tyrosine phosphatase receptor type F.
   
 0.525
PTPRS
Protein tyrosine phosphatase receptor type S.
   
0.525
NPTX1
Neuronal pentraxin 1.
    
 
 0.524
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
  
  
0.521
GRIA1
Glutamate ionotropic receptor AMPA type subunit 1.
   
 0.519
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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