STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A6Collagen type VI alpha 6 chain. (2181 aa)    
Predicted Functional Partners:
ADAMTS14
ADAM metallopeptidase with thrombospondin type 1 motif 14.
   
 0.568
MMP27
Matrix metallopeptidase 27.
   
 0.441
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.431
COL6A2
Collagen type VI alpha 2 chain.
  
0.428
COL4A4
Collagen type IV alpha 4 chain.
  
 
0.418
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.417
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.417
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.