STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAMD1Sterile alpha motif domain containing 1. (292 aa)    
Predicted Functional Partners:
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.584
MEAF6
MYST/Esa1 associated factor 6.
   
 0.579
DMAP1
DNA methyltransferase 1 associated protein 1.
   
 0.526
MCRS1
Microspherule protein 1.
   
 0.499
TRRAP
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.496
G3U6X7_LOXAF
Uncharacterized protein.
    
 0.496
ARID4A
AT-rich interaction domain 4A.
   
 0.489
ARID4B
AT-rich interaction domain 4B.
   
 0.489
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.487
BRD1
Bromodomain containing 1.
   
 0.462
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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