Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (609 aa)    
Predicted Functional Partners:
UBE2D1
Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.840
LDB1
LIM domain binding 1.
    
 
 0.780
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.761
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.639
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
    
 0.639
NEXMIF
Neurite extension and migration factor.
 
    
 0.621
LHX3
LIM homeobox 3.
    
 
 0.587
SMAD7
Mothers against decapentaplegic homolog.
    
 0.554
LDB2
LIM domain binding 2.
    
 
 0.540
UBXN1
UBX domain protein 1.
   
 
 0.538
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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