STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF19ARBR-type E3 ubiquitin transferase. (838 aa)    
Predicted Functional Partners:
PSMC3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
     
 0.787
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.763
IFT88
Intraflagellar transport 88.
    
 0.652
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.644
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.576
RNF7
Ring finger protein 7.
    
 0.571
PFN4
Profilin; Belongs to the profilin family.
      
 0.568
TUBGCP3
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
   
  
 0.553
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.524
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
    
 0.524
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.