STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF111Ring finger protein 111. (992 aa)    
Predicted Functional Partners:
SMAD7
Mothers against decapentaplegic homolog.
   
 0.990
SMAD6
Mothers against decapentaplegic homolog.
   
 0.897
SKIL
SKI like proto-oncogene.
   
 0.891
LOC100676713
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.868
UBE2N
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.868
SKI
SKI proto-oncogene.
   
 0.854
SUMO1
Small ubiquitin-related modifier.
   
 0.782
G3UN99_LOXAF
Small ubiquitin-related modifier.
   
 0.782
SMAD2
Mothers against decapentaplegic homolog.
   
 0.753
SMAD3
SMAD family member 3.
   
 0.753
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.