STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SOX30SRY-box transcription factor 30. (755 aa)    
Predicted Functional Partners:
DMRT1
Uncharacterized protein.
    
 0.677
TBX4
T-box transcription factor 4.
    
 0.621
CTNNB1
Catenin beta 1.
    
 0.613
DMRTC2
DMRT like family C2.
    
 0.566
STAT2
Signal transducer and activator of transcription.
    
 0.523
FAM71D
Family with sequence similarity 71 member D.
      
 0.504
SOX13
SRY-box transcription factor 13.
   
0.502
GALNT12
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.497
TANGO2
Transport and golgi organization 2 homolog.
    
 
 0.496
RUNX1
Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.
   
 0.496
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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