STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRDE2NRDE-2, necessary for RNA interference, domain containing. (1137 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
    
 
 0.923
PPP2R2B
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 
 0.831
PPP2R2A
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 
 0.831
ZNFX1
Zinc finger NFX1-type containing 1.
      
 0.684
CCDC174
Coiled-coil domain containing 174.
    
 
 0.650
GPATCH1
G-patch domain containing 1.
   
 
 0.598
PLK3
Polo like kinase 3.
    
 
 0.597
PLK2
Serine/threonine-protein kinase PLK.
    
 
 0.597
PLK1
Serine/threonine-protein kinase PLK.
    
 
 0.597
G3UHW2_LOXAF
Uncharacterized protein.
    
 
 0.597
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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