STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTF3C6General transcription factor IIIC subunit 6. (225 aa)    
Predicted Functional Partners:
GTF3C5
General transcription factor IIIC subunit 5.
   
 0.997
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.996
GTF3C4
General transcription factor IIIC subunit 4.
    
 0.995
GTF3C2
General transcription factor IIIC subunit 2.
    
 0.992
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.981
BRF1
BRF1 RNA polymerase III transcription initiation factor subunit.
     
  0.707
ZNF512
Zinc finger protein 512.
    
 0.703
ZNF512B
Zinc finger protein 512B.
    
 0.703
BDP1
Uncharacterized protein.
     
  0.694
G3U6N7_LOXAF
SANT domain-containing protein.
     
  0.694
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.