Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC71Coiled-coil domain containing 71. (467 aa)    
Predicted Functional Partners:
FAM207A
Family with sequence similarity 207 member A.
   
  
 0.513
CHTOP
Chromatin target of PRMT1.
      
 0.505
TMEM158
Transmembrane protein 158 (gene/pseudogene).
      
 0.499
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.480
GTSE1
G2 and S-phase expressed 1.
  
     0.473
EXOSC4
Exosome component 4.
   
  
 0.441
ZSCAN25
Zinc finger and SCAN domain containing 25.
  
     0.420
TMEM98
Transmembrane protein 98.
      
 0.418
ARHGAP29
Rho GTPase activating protein 29.
      
 0.418
CACNA1H
Calcium voltage-gated channel subunit alpha1 H.
      
 0.407
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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