STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMX1ALIM homeobox transcription factor 1 alpha. (382 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.781
LDB2
LIM domain binding 2.
    
 0.650
PKNOX2
PBX/knotted 1 homeobox 2.
    
 
 0.599
MAB21L2
Mab-21 like 2.
    
 
 0.580
FOXA2
Forkhead box A2.
    
 
 0.565
OTX2
Orthodenticle homeobox 2.
    
 
 0.551
FOXP2
Forkhead box P2.
      
 0.545
TBX20
T-box transcription factor 20.
    
 0.540
ATP6V0A4
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
      
 0.537
FOXI1
Forkhead box I1.
   
 0.532
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.