STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRRG4Proline rich and Gla domain 4. (226 aa)    
Predicted Functional Partners:
QSER1
Glutamine and serine rich 1.
 
    
 0.675
RAB3GAP2
RAB3 GTPase activating non-catalytic protein subunit 2.
      
 0.551
IRF6
Interferon regulatory factor 6.
      
 0.525
SCRT1
Scratch family transcriptional repressor 1.
      
 0.519
SDR16C5
Short chain dehydrogenase/reductase family 16C member 5; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.516
AP3B2
AP-3 complex subunit beta.
      
 0.507
DSCC1
DNA replication and sister chromatid cohesion 1.
      
 0.489
BTBD1
BTB domain containing 1.
      
 0.479
MKX
Mohawk homeobox.
      
 0.462
ATRX
ATRX chromatin remodeler.
      
 0.455
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.