STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM12LSM12 homolog. (195 aa)    
Predicted Functional Partners:
ATXN2
Ataxin 2.
    
 
 0.895
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
    
 
 0.895
ATXN2L
Ataxin 2 like.
    
 
 0.895
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
    
 
 0.809
KIFBP
KIF1 binding protein.
    
 
 0.760
LSM1
U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.
   
 
 0.717
RTRAF
RNA transcription, translation and transport factor.
    
 
 0.612
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
  
 0.605
LSM10
LSM10, U7 small nuclear RNA associated.
   
  
 0.592
ZCCHC4
Zinc finger CCHC-type containing 4.
      
 0.587
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.