STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSM12LSM12 homolog. (195 aa)    
Predicted Functional Partners:
ATXN2L
Ataxin 2 like.
    
 0.980
ATXN2
Ataxin 2.
    
 0.955
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.950
NUFIP2
Nuclear FMR1 interacting protein 2.
   
 
 0.833
MCRIP2
MAPK regulated corepressor interacting protein 2.
    
   0.808
RTRAF
RNA transcription, translation and transport factor.
    
 
 0.771
KIFBP
KIF1 binding protein.
   
 
 0.745
ZCCHC4
Zinc finger CCHC-type containing 4.
      
 0.745
LSM1
U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.
   
 
 0.731
FAM98A
Family with sequence similarity 98 member A.
   
 
 0.694
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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