STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD4RNA pseudouridine synthase D4. (376 aa)    
Predicted Functional Partners:
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.755
PUS7L
Pseudouridine synthase 7 like.
    
 
 0.736
GTPBP3
GTP binding protein 3, mitochondrial.
  
 
 0.722
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.721
PUS7
Pseudouridine synthase 7.
    
 
 0.707
PUS3
Pseudouridine synthase 3.
 
  
 0.700
FASTKD2
FAST kinase domains 2.
   
 
 0.668
NGRN
Neugrin, neurite outgrowth associated.
    
 
 0.662
MRPL47
Mitochondrial ribosomal protein L47.
    
 
 0.654
MRM1
Mitochondrial rRNA methyltransferase 1.
  
 
 0.648
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.