STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYL1LYL1 basic helix-loop-helix family member. (284 aa)    
Predicted Functional Partners:
TCF3
Transcription factor 3.
   
 0.944
TCF12
Transcription factor 12.
   
 0.803
TCF4
Transcription factor 4.
   
 0.803
LMO2
LIM domain only 2.
   
 0.752
LDB1
LIM domain binding 1.
    
 0.578
EP300
E1A binding protein p300.
    
 0.529
LDB2
LIM domain binding 2.
    
 0.524
ZFP28
ZFP28 zinc finger protein.
    
 
 0.523
GATA2
GATA binding protein 2.
   
 0.521
TAF12
TATA-box binding protein associated factor 12.
      
 0.500
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.