Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRSF5Serine and arginine rich splicing factor 5. (271 aa)    
Predicted Functional Partners:
SRSF1
Uncharacterized protein.
   
 0.984
SRSF7
Serine and arginine rich splicing factor 7.
   
 0.977
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.965
SRSF2
RRM domain-containing protein.
   
 0.961
SLU7
SLU7 homolog, splicing factor.
    
 0.939
SRPK1
SRSF protein kinase 1.
    
 0.930
TRA2B
Transformer 2 beta homolog.
   
 0.929
CDC40
Cell division cycle 40.
   
 0.926
DHX38
DEAH-box helicase 38.
    
 0.926
SRSF11
Serine and arginine rich splicing factor 11.
   
 0.924
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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