Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPATC1Spermatogenesis and centriole associated 1. (492 aa)    
Predicted Functional Partners:
RTL6
Retrotransposon Gag like 6.
      
 0.692
CNTLN
Centlein.
      
 0.659
CFAP52
Cilia and flagella associated protein 52.
   
  
 0.624
CLDN17
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.579
PCBP3
Poly(rC) binding protein 3.
    
 
 0.577
SPATA6
Spermatogenesis associated 6.
      
 0.573
SUN5
Sad1 and UNC84 domain containing 5.
   
  
 0.558
KRTCAP3
Keratinocyte associated protein 3.
      
 0.529
DEUP1
Deuterosome assembly protein 1.
      
 0.510
TRAPPC2L
Trafficking protein particle complex 2 like.
      
 0.505
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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