STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD22-oxoglutarate and iron dependent oxygenase domain containing 2. (350 aa)    
Predicted Functional Partners:
TRMT2A
tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
    0.553
WDR83
WD repeat domain 83.
   
  
 0.537
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.518
JMJD4
Jumonji domain containing 4.
   
  
 0.466
TAP1
Transporter 1, ATP binding cassette subfamily B member.
   
  
 0.444
ABCB9
ATP binding cassette subfamily B member 9.
   
  
 0.444
TMEM218
Transmembrane protein 218.
      
 0.441
WBP1
WW domain binding protein 1.
      
 0.439
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
   
 0.413
CERCAM
Cerebral endothelial cell adhesion molecule.
   
 0.413
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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