Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VGLL3Vestigial like family member 3. (286 aa)    
Predicted Functional Partners:
MRGPRF
MAS related GPR family member F; Belongs to the G-protein coupled receptor 1 family.
      
 0.733
FKBP10
Peptidylprolyl isomerase.
      
 0.720
PRRX2
Paired related homeobox 2.
      
 0.715
PRRX1
Paired related homeobox 1.
      
 0.674
ATOH8
Atonal bHLH transcription factor 8.
      
 0.672
EFEMP2
EGF containing fibulin extracellular matrix protein 2.
   
  
 0.664
COL6A2
Collagen type VI alpha 2 chain.
      
 0.651
LOX
Lysyl oxidase.
   
  
 0.631
TIMP2
TIMP metallopeptidase inhibitor 2.
      
 0.619
POSTN
Periostin.
      
 0.602
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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