STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXD3Homeobox D3. (430 aa)    
Predicted Functional Partners:
HOXD4
Homeobox D4.
   
  
 0.944
HOXB3
Homeobox B3.
   
  
 0.645
MRPL20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
      
 0.545
MTX2
Metaxin 2.
      
 0.539
COA7
Cytochrome c oxidase assembly factor 7 (putative).
    
 
 0.534
TACO1
Translational activator of cytochrome c oxidase I.
      
 0.529
HOXA6
Homeobox A6.
   
  
 0.505
PDZRN4
PDZ domain containing ring finger 4.
    
 
 0.464
PDZRN3
PDZ domain containing ring finger 3.
    
 
 0.464
RPS3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
      
 0.462
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.