STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD3Homeobox D3. (430 aa)    
Predicted Functional Partners:
HOXD4
Homeobox D4.
  
  
0.949
HOXA6
Homeobox A6.
   
  
0.560
COA7
Cytochrome c oxidase assembly factor 7 (putative).
    
 
 0.542
SPNS2
Sphingolipid transporter 2.
   
  
 0.529
TACO1
Translational activator of cytochrome c oxidase I.
    
 
 0.504
MRPL20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
      
 0.502
HOXD9
Homeobox D9.
   
 
0.440
PBX1
PBX homeobox 1.
    
 0.423
PBX3
PBX homeobox 3.
    
 0.423
PBX2
PBX homeobox 2.
    
 0.423
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.