STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox D4. (239 aa)    
Predicted Functional Partners:
HOXD3
Homeobox D3.
   
  
 0.944
HOXA4
Homeobox A4.
   
    0.926
HOXB7
Homeobox B7.
   
 
 0.705
HOXA7
Homeobox A7.
   
 
 0.694
HOXC5
Homeobox C5.
   
 
 0.683
HOXB6
Homeobox B6.
   
 
 0.669
HOXC4
Homeobox C4.
   
 
 0.665
HOXC6
Homeobox C6.
   
 
 0.636
HOXB5
Homeobox B5.
   
 
 0.624
HOXB4
Homeobox B4.
   
 
 0.602
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.