STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox D4. (239 aa)    
Predicted Functional Partners:
HOXD3
Homeobox D3.
  
  
0.949
HOXB7
Homeobox B7.
   
 
0.670
HOXC4
Homeobox C4.
   
 
0.647
HOXB5
Homeobox B5.
   
 
0.643
HOXA7
Homeobox A7.
   
 
0.591
HOXB4
Homeobox B4.
  
 
0.589
HOXB6
Homeobox B6.
   
 
0.588
HOXC6
Homeobox C6.
   
 
0.574
HOXC5
Homeobox C5.
   
  
0.541
HOXA6
Homeobox A6.
    
  
0.497
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.