STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN18Tetraspanin. (248 aa)    
Predicted Functional Partners:
TXNL4B
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
      
 0.580
G3U4G1_LOXAF
Ig-like domain-containing protein.
   
 0.530
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.521
SLC35F4
Solute carrier family 35 member F4.
      
 0.447
TSG101
Tumor susceptibility 101.
      
 0.444
PTGFRN
Prostaglandin F2 receptor inhibitor.
    
 
 0.424
ADAM10
ADAM metallopeptidase domain 10.
    
 0.420
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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