G3SWQ4_LOXAF protein (Loxodonta africana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3SWQ4_LOXAF

Uncharacterized protein. (1052 aa)

Predicted Functional Partners:

CANT1

0.671

FAU

0.659

G3TRE8_LOXAF

0.659

CEP85

0.594

GRXCR2

0.569

ST8SIA3

0.546

GRXCR1

0.537

NPEPL1

0.525

TSPAN9

0.516

RANBP2

0.480

Your Current Organism:

Loxodonta africana

NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CANT1	G3SWQ4_LOXAF	ENSLAFP00000002888	ENSLAFP00000004773	Calcium activated nucleotidase 1.	Uncharacterized protein.	0.671
CEP85	G3SWQ4_LOXAF	ENSLAFP00000022907	ENSLAFP00000004773	Centrosomal protein 85.	Uncharacterized protein.	0.594
FAU	G3SWQ4_LOXAF	ENSLAFP00000001409	ENSLAFP00000004773	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.659
FAU	G3TRE8_LOXAF	ENSLAFP00000001409	ENSLAFP00000018156	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.993
G3SWQ4_LOXAF	CANT1	ENSLAFP00000004773	ENSLAFP00000002888	Uncharacterized protein.	Calcium activated nucleotidase 1.	0.671
G3SWQ4_LOXAF	CEP85	ENSLAFP00000004773	ENSLAFP00000022907	Uncharacterized protein.	Centrosomal protein 85.	0.594
G3SWQ4_LOXAF	FAU	ENSLAFP00000004773	ENSLAFP00000001409	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.659
G3SWQ4_LOXAF	G3TRE8_LOXAF	ENSLAFP00000004773	ENSLAFP00000018156	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.659
G3SWQ4_LOXAF	GRXCR1	ENSLAFP00000004773	ENSLAFP00000015911	Uncharacterized protein.	Glutaredoxin and cysteine rich domain containing 1.	0.537
G3SWQ4_LOXAF	GRXCR2	ENSLAFP00000004773	ENSLAFP00000015476	Uncharacterized protein.	Glutaredoxin and cysteine rich domain containing 2.	0.569
G3SWQ4_LOXAF	NPEPL1	ENSLAFP00000004773	ENSLAFP00000022898	Uncharacterized protein.	Aminopeptidase like 1.	0.525
G3SWQ4_LOXAF	RANBP2	ENSLAFP00000004773	ENSLAFP00000000630	Uncharacterized protein.	RAN binding protein 2.	0.480
G3SWQ4_LOXAF	ST8SIA3	ENSLAFP00000004773	ENSLAFP00000015048	Uncharacterized protein.	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3; Belongs to the glycosyltransferase 29 family.	0.546
G3SWQ4_LOXAF	TSPAN9	ENSLAFP00000004773	ENSLAFP00000016339	Uncharacterized protein.	Tetraspanin.	0.516
G3TRE8_LOXAF	FAU	ENSLAFP00000018156	ENSLAFP00000001409	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.993
G3TRE8_LOXAF	G3SWQ4_LOXAF	ENSLAFP00000018156	ENSLAFP00000004773	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.659
GRXCR1	G3SWQ4_LOXAF	ENSLAFP00000015911	ENSLAFP00000004773	Glutaredoxin and cysteine rich domain containing 1.	Uncharacterized protein.	0.537
GRXCR1	GRXCR2	ENSLAFP00000015911	ENSLAFP00000015476	Glutaredoxin and cysteine rich domain containing 1.	Glutaredoxin and cysteine rich domain containing 2.	0.507
GRXCR2	G3SWQ4_LOXAF	ENSLAFP00000015476	ENSLAFP00000004773	Glutaredoxin and cysteine rich domain containing 2.	Uncharacterized protein.	0.569
GRXCR2	GRXCR1	ENSLAFP00000015476	ENSLAFP00000015911	Glutaredoxin and cysteine rich domain containing 2.	Glutaredoxin and cysteine rich domain containing 1.	0.507

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About