STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC23Leucine rich repeat containing 23. (341 aa)    
Predicted Functional Partners:
CFAP57
Cilia and flagella associated protein 57.
   
 0.881
DNAI1
Dynein axonemal intermediate chain 1.
   
 0.850
CCDC113
Coiled-coil domain containing 113.
   
 
 0.817
DNALI1
Dynein axonemal light intermediate chain 1.
   
 0.792
USP5
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
      
 0.731
CCDC40
Coiled-coil domain containing 40.
   
 
 0.726
RSPH14
Uncharacterized protein.
   
 
 0.713
AK9
Uncharacterized protein.
    
 0.712
G3TCK5_LOXAF
Uncharacterized protein.
    
 0.712
LRRC34
Leucine rich repeat containing 34.
   
 0.702
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.