Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DBR1Debranching RNA lariats 1. (542 aa)    
Predicted Functional Partners:
DHX38
DEAH-box helicase 38.
    
 
 0.884
CWF19L1
CWF19 like cell cycle control factor 1.
   
 
 0.840
POLR3H
RNA polymerase III subunit H.
      
 0.682
VPS13A
Vacuolar protein sorting 13 homolog A.
    
   0.665
POLR3K
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
      
 0.656
LTN1
Listerin E3 ubiquitin protein ligase 1.
      
 0.593
METTL9
Methyltransferase like 9.
 
      0.561
TARDBP
TAR DNA binding protein.
   
  
 0.536
NME8
NME/NM23 family member 8.
      
 0.511
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
      
 0.497
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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