STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF1PHD finger protein 1. (571 aa)    
Predicted Functional Partners:
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.981
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
   
 0.980
EZH2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
 0.977
EED
Embryonic ectoderm development.
   
 0.977
EPOP
Elongin BC and polycomb repressive complex 2 associated protein.
    
 0.944
JARID2
Jumonji and AT-rich interaction domain containing 2.
    
 0.891
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.882
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.882
MBTD1
Mbt domain containing 1.
   
 
 0.811
AEBP2
AE binding protein 2.
    
 0.790
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.