STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WBP4WW domain binding protein 4. (369 aa)    
Predicted Functional Partners:
ZMAT2
Zinc finger matrin-type 2.
   
 0.969
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
    
 0.937
PRPF6
Pre-mRNA processing factor 6.
   
 0.924
PRPF31
Pre-mRNA processing factor 31.
    
 0.919
MFAP1
Microfibril associated protein 1.
   
 0.918
IK
IK cytokine.
    
  0.912
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.887
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.882
PRPF38A
Pre-mRNA processing factor 38A.
   
 
 0.877
TCERG1
Transcription elongation regulator 1.
    
 0.876
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.