Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT10Synaptotagmin 10. (522 aa)    
Predicted Functional Partners:
SYT3
Synaptotagmin 3.
   
   0.821
SYT6
Synaptotagmin 6.
    
   0.810
NMS
Neuromedin S.
      
 0.737
VPS53
VPS53 subunit of GARP complex.
   
  
 0.720
AFAP1L1
Actin filament associated protein 1 like 1.
      
 0.704
RPH3AL
Rabphilin 3A like (without C2 domains).
   
 
 0.599
SYT9
Synaptotagmin 9.
   
  0.589
ZFHX3
Zinc finger homeobox 3.
      
 0.586
GEMIN4
Gem nuclear organelle associated protein 4.
      
 0.560
TDRD5
Tudor domain containing 5.
      
 0.557
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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