Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TMEM19Transmembrane protein 19. (350 aa)    
Predicted Functional Partners:
BSCL2
BSCL2 lipid droplet biogenesis associated, seipin.
    
   0.786
TTR
Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.
      
 0.737
SCARF1
Scavenger receptor class F member 1.
      
 0.737
RUNDC3A
RUN domain containing 3A.
      
 0.710
BPIFB1
BPI fold containing family B member 1.
      
 0.678
COL3A1
Collagen type III alpha 1 chain.
      
 0.678
INO80D
INO80 complex subunit D.
      
 0.602
RTRAF
RNA transcription, translation and transport factor.
      
 0.596
NTN5
Netrin 5.
      
 0.591
SLC30A5
Solute carrier family 30 member 5.
      
 0.591
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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