Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARMC2Armadillo repeat containing 2. (872 aa)    
Predicted Functional Partners:
WDR63
WD repeat domain 63.
      
 0.737
CEP78
Centrosomal protein 78.
      
 0.623
TTC21A
Uncharacterized protein.
      
 0.602
TTC29
Tetratricopeptide repeat domain 29.
      
 0.600
CFAP58
Cilia and flagella associated protein 58.
      
 0.580
CDT1
Chromatin licensing and DNA replication factor 1.
      
 0.571
SHQ1
CS domain-containing protein.
      
 0.546
DNAH1
Dynein axonemal heavy chain 1.
      
 0.546
SPEF2
Sperm flagellar 2.
   
 
 0.539
ARMC6
Armadillo repeat containing 6.
      
 0.538
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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