STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF169Ring finger protein 169. (471 aa)    
Predicted Functional Partners:
DYRK1A
Dual specificity tyrosine phosphorylation regulated kinase 1A.
   
 
 0.956
DCAF7
DDB1 and CUL4 associated factor 7.
   
 
 0.870
USP7
Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family.
    
 
 0.840
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.834
FBXO38
F-box protein 38.
    
 
 0.818
RPS27A
Ubiquitin-like domain-containing protein.
   
  0.760
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
   
  0.760
DYRK1B
Dual specificity tyrosine phosphorylation regulated kinase 1B.
   
 
 0.754
BRCA1
Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...]
    
 0.748
UBB
Ubiquitin B.
    
  0.747
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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