STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPN4Opsin 4. (472 aa)    
Predicted Functional Partners:
GIT2
GIT ArfGAP 2.
   
   0.784
GNAT1
G protein subunit alpha transducin 1.
    
 0.757
CNGA3
Cyclic nucleotide gated channel subunit alpha 3.
   
 
 0.745
GNAT2
G protein subunit alpha transducin 2.
    
 0.701
GNB1
G protein subunit beta 1.
   
 0.667
GNB2
G protein subunit beta 2.
   
 0.667
GNG13
G protein subunit gamma 13.
   
 0.655
PLCB4
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
     
 0.625
PHACTR2
Phosphatase and actin regulator.
      
 0.624
ARRB2
Arrestin beta 2.
   
 0.614
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.