STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDTC1WD and tetratricopeptide repeats 1. (677 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.968
COPS4
COP9 signalosome subunit 4.
    
 0.750
COPS8
COP9 signalosome subunit 8.
    
 0.731
CUL4B
Cullin 4B; Belongs to the cullin family.
    
 0.731
CUL4A
Cullin 4A; Belongs to the cullin family.
    
 0.731
G3T1T4_LOXAF
WD_REPEATS_REGION domain-containing protein.
     
 0.725
DCAF11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.689
COPS6
COP9 signalosome subunit 6.
    
 0.687
DDA1
DET1 and DDB1 associated 1.
    
 0.672
DCAF7
DDB1 and CUL4 associated factor 7.
   
 
  0.669
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.