STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBPTATA-box binding protein. (314 aa)    
Predicted Functional Partners:
GTF2B
General transcription factor IIB.
   
 0.995
TAF1
Transcription initiation factor TFIID subunit.
    
 0.980
TAF6
TATA-box binding protein associated factor 6.
   
 0.972
G3SZ57_LOXAF
TAFII55_N domain-containing protein.
    
 0.971
TAF2
TATA-box binding protein associated factor 2.
    
 0.971
TAF12
TATA-box binding protein associated factor 12.
    
 0.971
TAF13
TATA-box binding protein associated factor 13.
   
 0.968
TAF11
TAFII28 domain-containing protein.
   
 0.968
GTF2E1
General transcription factor IIE subunit 1.
   
 0.966
GTF2F2
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
    
 0.965
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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