STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAPD5Uncharacterized protein. (500 aa)    
Predicted Functional Partners:
TENT4A
Terminal nucleotidyltransferase 4A.
  
  
0.908
MTREX
Mtr4 exosome RNA helicase.
   
 0.812
ZCCHC7
Uncharacterized protein.
   
 
 0.765
ZCCHC14
Zinc finger CCHC-type containing 14.
   
 
 0.664
EXOSC10
Exosome component 10.
   
 
 0.637
ZCCHC8
Zinc finger CCHC-type containing 8.
     
 0.534
CNOT9
CCR4-NOT transcription complex subunit 9.
    
   0.524
SCAF4
SR-related CTD associated factor 4.
    
 
 0.488
SCAF8
SR-related CTD associated factor 8.
    
 
 0.488
SKIV2L
Ski2 like RNA helicase.
   
 
 0.474
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.