Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C. (843 aa)    
Predicted Functional Partners:
TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B.
    
 0.998
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
    
 0.998
TAF1A
TATA-box binding protein associated factor, RNA polymerase I subunit A.
    
 0.996
TBP
TATA-box binding protein.
    
 0.946
TBPL2
TATA-box binding protein like 2.
    
 0.920
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.893
POLR1E
RNA polymerase I subunit E.
   
 
 0.697
SUOX
Sulfite oxidase.
   
  0.677
TWISTNB
TWIST neighbor.
     
 0.676
G3SUA0_LOXAF
PDZ domain-containing protein.
      
 0.675
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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