STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADAMTS2ADAM metallopeptidase with thrombospondin type 1 motif 2. (1034 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
   
 0.790
COL1A2
Collagen type I alpha 2 chain.
   
 0.772
COL1A1
Collagen type I alpha 1 chain.
   
 0.732
COL3A1
Collagen type III alpha 1 chain.
   
 0.699
EFEMP2
EGF containing fibulin extracellular matrix protein 2.
   
 0.599
ADAMTS19
PLAC domain-containing protein.
 
 
 
 0.598
G3UGB1_LOXAF
GON domain-containing protein.
 
 
 
0.598
P3H4
Prolyl 3-hydroxylase family member 4 (non-enzymatic).
      
 0.592
G3T4R3_LOXAF
PLAC domain-containing protein.
 
 
 
 0.590
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
      
 0.582
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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