STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTHRC1Collagen triple helix repeat containing 1. (244 aa)    
Predicted Functional Partners:
MKS1
MKS transition zone complex subunit 1.
      
 0.718
CEBPG
CCAAT enhancer binding protein gamma.
      
 0.602
VDAC3
Voltage dependent anion channel 3.
      
 0.585
GRK7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.569
SEMA4F
Ssemaphorin 4F; Belongs to the semaphorin family.
      
 0.508
FZD3
Frizzled class receptor 3; Belongs to the G-protein coupled receptor Fz/Smo family.
      
 0.502
TCAF1
TRPM8 channel associated factor 1.
      
 0.498
TRIB3
Tribbles pseudokinase 3.
      
 0.494
COL1A1
Collagen type I alpha 1 chain.
   
  
 0.454
DPT
Dermatopontin.
      
 0.400
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.